"A majority of the cases relate to (ethnic minority) Tamils," probe chairman Mahanama Tillakaratne said.
"Locally and internationally there has been a big issue of abductions, disappearances and unsolved killings," he said.
"This is something very bad for the image of the country.
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Tillakaratne was named last year by Sri Lankan President Mahinda Rajapakse to investigate a wave of killings and disappearances that has shaken the country where Tamils are fighting for an independent homeland.
Many of the victims have been executed with their hands tied behind their backs and shot through the head.
During the same September to February period, a total of 2,020 people were either abducted or disappeared, Tillakaratne added.
Some 1,134 were later found alive and reunited with their fa